bes  Updated for version 3.20.13
NCMLRequestHandler.cc
1 // This file is part of the "NcML Module" project, a BES module designed
3 // to allow NcML files to be used to be used as a wrapper to add
4 // AIS to existing datasets of any format.
5 //
6 // Copyright (c) 2009 OPeNDAP, Inc.
7 // Author: Michael Johnson <m.johnson@opendap.org>
8 //
9 // For more information, please also see the main website: http://opendap.org/
10 //
11 // This library is free software; you can redistribute it and/or
12 // modify it under the terms of the GNU Lesser General Public
13 // License as published by the Free Software Foundation; either
14 // version 2.1 of the License, or (at your option) any later version.
15 //
16 // This library is distributed in the hope that it will be useful,
17 // but WITHOUT ANY WARRANTY; without even the implied warranty of
18 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
19 // Lesser General Public License for more details.
20 //
21 // You should have received a copy of the GNU Lesser General Public
22 // License along with this library; if not, write to the Free Software
23 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
24 //
25 // Please see the files COPYING and COPYRIGHT for more information on the GLPL.
26 //
27 // You can contact OPeNDAP, Inc. at PO Box 112, Saunderstown, RI. 02874-0112.
29 
30 #include "config.h"
31 
32 #include <memory>
33 
34 #include <libdap/DMR.h>
35 #include <libdap/DataDDS.h>
36 
37 #include <libdap/mime_util.h>
38 #include <libdap/D4BaseTypeFactory.h>
39 
40 #include "NCMLRequestHandler.h"
41 
42 #include <BESConstraintFuncs.h>
43 #include <BESContainerStorage.h>
44 #include <BESContainerStorageList.h>
45 #include <BESDapNames.h>
46 #include "BESDataDDSResponse.h"
47 #include <BESDataNames.h>
48 #include <BESDASResponse.h>
49 #include <BESDDSResponse.h>
50 #include <BESDMRResponse.h>
51 
52 #include <BESDebug.h>
53 #include "BESStopWatch.h"
54 #include <BESInternalError.h>
55 #include <BESDapError.h>
56 #include <BESError.h>
57 #include <BESRequestHandlerList.h>
58 #include <BESResponseHandler.h>
59 #include <BESResponseNames.h>
60 #include <BESServiceRegistry.h>
61 #include <BESTextInfo.h>
62 #include <BESUtil.h>
63 #include <BESVersionInfo.h>
64 #include <TheBESKeys.h>
65 
66 #include "DDSLoader.h"
67 
68 #include "NCMLDebug.h"
69 #include "NCMLUtil.h"
70 #include "NCMLParser.h"
71 #include "NCMLResponseNames.h"
72 #include "SimpleLocationParser.h"
73 
74 using namespace agg_util;
75 using namespace ncml_module;
76 using namespace libdap;
77 
78 bool NCMLRequestHandler::_global_attributes_container_name_set = false;
79 string NCMLRequestHandler::_global_attributes_container_name;
80 
81 NCMLRequestHandler::NCMLRequestHandler(const string &name) :
82  BESRequestHandler(name)
83 {
84  add_method(DAS_RESPONSE, NCMLRequestHandler::ncml_build_das);
85  add_method(DDS_RESPONSE, NCMLRequestHandler::ncml_build_dds);
86  add_method(DATA_RESPONSE, NCMLRequestHandler::ncml_build_data);
87 
88  add_method(DMR_RESPONSE, NCMLRequestHandler::ncml_build_dmr);
89  add_method(DAP4DATA_RESPONSE, NCMLRequestHandler::ncml_build_dmr);
90 
91  add_method(VERS_RESPONSE, NCMLRequestHandler::ncml_build_vers);
92  add_method(HELP_RESPONSE, NCMLRequestHandler::ncml_build_help);
93 
94  if (NCMLRequestHandler::_global_attributes_container_name_set == false) {
95  bool key_found = false;
96  string value;
97  TheBESKeys::TheKeys()->get_value("NCML.GlobalAttributesContainerName", value, key_found);
98  if (key_found) {
99  // It was set in the conf file
100  NCMLRequestHandler::_global_attributes_container_name_set = true;
101 
102  NCMLRequestHandler::_global_attributes_container_name = value;
103  }
104  }
105 }
106 
107 NCMLRequestHandler::~NCMLRequestHandler()
108 {
109 }
110 
111 #if 0
112 // Not used. jhrg 4/16/14
113 
114 // This is the original example from Patrick or James for loading local file within the BES...
115 // Still used by DataDDS call, but the other callbacks use DDSLoader
116 // to get a brandy new DDX response.
117 // @see DDSLoader
118 bool NCMLRequestHandler::ncml_build_redirect(BESDataHandlerInterface &dhi, const string& location)
119 {
120  // The current container in dhi is a reference to the ncml file.
121  // Need to parse the ncml file here and get the list of locations
122  // that we will be using. Any constraints defined?
123 
124  // do this for each of the locations retrieved from the ncml file.
125  // If there are more than one locations in the ncml then we can't
126  // set the context for dap_format to dap2. This will create a
127  // structure for each of the locations in the resulting dap object.
128  string sym_name = dhi.container->get_symbolic_name();
129  BESContainerStorageList *store_list = BESContainerStorageList::TheList();
130  BESContainerStorage *store = store_list->find_persistence("catalog");
131  if (!store) {
132  throw BESInternalError("couldn't find the catalog storage", __FILE__, __LINE__);
133  }
134  // this will throw an exception if the location isn't found in the
135  // catalog. Might want to catch this. Wish the add returned the
136  // container object created. Might want to change it.
137  string new_sym = sym_name + "_location1";
138  store->add_container(new_sym, location, "");
139 
140  BESContainer *container = store->look_for(new_sym);
141  if (!container) {
142  throw BESInternalError("couldn't find the container" + sym_name, __FILE__, __LINE__);
143  }
144  BESContainer *ncml_container = dhi.container;
145  dhi.container = container;
146 
147  // this will throw an exception if there is a problem building the
148  // response for this container. Might want to catch this
149  BESRequestHandlerList::TheList()->execute_current(dhi);
150 
151  // clean up
152  dhi.container = ncml_container;
153  store->del_container(new_sym);
154 
155  return true;
156 }
157 #endif
158 
159 // Here we load the DDX response with by hijacking the current dhi via DDSLoader
160 // and hand it to our parser to load the ncml, load the DDX for the location,
161 // apply ncml transformations to it, then return the modified DDS.
162 bool NCMLRequestHandler::ncml_build_das(BESDataHandlerInterface &dhi)
163 {
164  BESStopWatch sw;
165  if (BESDebug::IsSet(TIMING_LOG_KEY)) sw.start("NCMLRequestHandler::ncml_build_das", dhi.data[REQUEST_ID]);
166 
167  string filename = dhi.container->access();
168 
169  // Any exceptions winding through here will cause the loader and parser dtors
170  // to clean up dhi state, etc.
171  DDSLoader loader(dhi);
172  NCMLParser parser(loader);
173  unique_ptr<BESDapResponse> loaded_bdds = parser.parse(filename, DDSLoader::eRT_RequestDDX);
174 
175  // Now fill in the desired DAS response object from the DDS
176  DDS* dds = NCMLUtil::getDDSFromEitherResponse(loaded_bdds.get());
177  VALID_PTR(dds);
178 
179  BESDASResponse *bdas = dynamic_cast<BESDASResponse *>(dhi.response_handler->get_response_object());
180  VALID_PTR(bdas);
181 
182  // Copy the modified DDS attributes into the DAS response object!
183  DAS *das = bdas->get_das();
184 
185  if (dds->get_dap_major() < 4)
186  NCMLUtil::hackGlobalAttributesForDAP2(dds->get_attr_table(),
187  NCMLRequestHandler::get_global_attributes_container_name());
188 
189  NCMLUtil::populateDASFromDDS(das, *dds);
190 
191  // loaded_bdds destroys itself.
192  return true;
193 }
194 
195 bool NCMLRequestHandler::ncml_build_dds(BESDataHandlerInterface &dhi)
196 {
197 #if 0
198  // original version 8/13/15
199  BESStopWatch sw;
200  if (BESDebug::IsSet(TIMING_LOG_KEY)) sw.start("NCMLRequestHandler::ncml_build_dds", dhi.data[REQUEST_ID]);
201 
202  string filename = dhi.container->access();
203 
204  // Any exceptions winding through here will cause the loader and parser dtors
205  // to clean up dhi state, etc.
206  unique_ptr<BESDapResponse> loaded_bdds(0);
207  {
208  DDSLoader loader(dhi);
209  NCMLParser parser(loader);
210  loaded_bdds = parser.parse(filename, DDSLoader::eRT_RequestDDX);
211  }
212  if (!loaded_bdds.get()) {
213  throw BESInternalError("Null BESDDSResonse in ncml DDS handler.", __FILE__, __LINE__);
214  }
215 
216  // Poke the handed down original response object with the loaded and modified one.
217  DDS* dds = NCMLUtil::getDDSFromEitherResponse(loaded_bdds.get());
218  VALID_PTR(dds);
219  BESResponseObject *response = dhi.response_handler->get_response_object();
220  BESDDSResponse *bdds_out = dynamic_cast<BESDDSResponse *>(response);
221  VALID_PTR(bdds_out);
222  DDS *dds = bdds_out->get_dds();
223  VALID_PTR(dds);
224 
225  if (dds->get_dap_major() < 4)
226  NCMLUtil::hackGlobalAttributesForDAP2(dds->get_attr_table(),
227  NCMLRequestHandler::get_global_attributes_container_name());
228 
229  // If we just use DDS::operator=, we get into trouble with copied
230  // pointers, bashing of the dataset name, etc etc so I specialize the copy for now.
232 
233  // Apply constraints to the result
234  // See comment below. jhrg 8/12/15 dhi.data[POST_CONSTRAINT] = dhi.container->get_constraint();
235  bdds_out->set_constraint(dhi);
236 
237  // Also copy in the name of the original ncml request
238  // TODO @HACK Not sure I want just the basename for the filename,
239  // but since the DDS/DataDDS response fills the dataset name with it,
240  // Our bes-testsuite fails since we get local path info in the dataset name.
241  dds->filename(name_path(filename));
242  dds->set_dataset_name(name_path(filename));
243 
244  return true;
245 #endif
246 
247  BESStopWatch sw;
248  if (BESDebug::IsSet(TIMING_LOG_KEY)) sw.start("NCMLRequestHandler::ncml_build_dds", dhi.data[REQUEST_ID]);
249 
250  string filename = dhi.container->access();
251 
252  // it better be a data response!
253  BESDDSResponse* ddsResponse = dynamic_cast<BESDDSResponse *>(dhi.response_handler->get_response_object());
254  NCML_ASSERT_MSG(ddsResponse,
255  "NCMLRequestHandler::ncml_build_data(): expected BESDDSResponse* but didn't get it!!");
256 
257  // Block it up to force cleanup of DHI.
258  {
259  DDSLoader loader(dhi);
260  NCMLParser parser(loader);
261  parser.parseInto(filename, DDSLoader::eRT_RequestDDX, ddsResponse);
262  }
263 
264  DDS *dds = ddsResponse->get_dds();
265  VALID_PTR(dds);
266 
267  if (dds->get_dap_major() < 4)
268  NCMLUtil::hackGlobalAttributesForDAP2(dds->get_attr_table(),
269  NCMLRequestHandler::get_global_attributes_container_name());
270 
271  // Apply constraints to the result
272  // See comment below. jhrg 8/12/15 dhi.data[POST_CONSTRAINT] = dhi.container->get_constraint();
273  ddsResponse->set_constraint(dhi);
274 
275  // Also copy in the name of the original ncml request
276  dds->filename(name_path(filename));
277  dds->set_dataset_name(name_path(filename));
278 
279  return true;
280 }
281 
282 bool NCMLRequestHandler::ncml_build_data(BESDataHandlerInterface &dhi)
283 {
284  BESStopWatch sw;
285  if (BESDebug::IsSet(TIMING_LOG_KEY)) sw.start("NCMLRequestHandler::ncml_build_data", dhi.data[REQUEST_ID]);
286 
287  string filename = dhi.container->access();
288 
289  // it better be a data response!
290  BESDataDDSResponse* dataResponse = dynamic_cast<BESDataDDSResponse *>(dhi.response_handler->get_response_object());
291  NCML_ASSERT_MSG(dataResponse,
292  "NCMLRequestHandler::ncml_build_data(): expected BESDataDDSResponse* but didn't get it!!");
293 
294  // Block it up to force cleanup of DHI.
295  {
296  DDSLoader loader(dhi);
297  NCMLParser parser(loader);
298  parser.parseInto(filename, DDSLoader::eRT_RequestDataDDS, dataResponse);
299  }
300 
301  // Apply constraints to the result
302 
303  // dhi.data[POST_CONSTRAINT] = dhi.container->get_constraint();
304  // Replaced the above with the code below. P West said, a while ago, that using set_constraint
305  // was better because BES containers would be supported. Not sure if that's a factor in this
306  // code... jhrg 8/12/15
307  dataResponse->set_constraint(dhi);
308 
309  // Also copy in the name of the original ncml request
310  DDS* dds = NCMLUtil::getDDSFromEitherResponse(dataResponse);
311  VALID_PTR(dds);
312 
313  dds->filename(name_path(filename));
314  dds->set_dataset_name(name_path(filename));
315 
316  return true;
317 }
318 
319 bool NCMLRequestHandler::ncml_build_dmr(BESDataHandlerInterface &dhi)
320 {
321  BESStopWatch sw;
322  if (BESDebug::IsSet(TIMING_LOG_KEY)) sw.start("NCMLRequestHandler::ncml_build_dmr", dhi.data[REQUEST_ID]);
323 
324  // Because this code does not yet know how to build a DMR directly, use
325  // the DMR ctor that builds a DMR using a 'full DDS' (a DDS with attributes).
326  // First step, build the 'full DDS'
327  string data_path = dhi.container->access();
328 
329  DDS *dds = 0; // This will be deleted when loaded_bdds goes out of scope.
330  unique_ptr<BESDapResponse> loaded_bdds;
331  try {
332  DDSLoader loader(dhi);
333  NCMLParser parser(loader);
334  loaded_bdds = parser.parse(data_path, DDSLoader::eRT_RequestDDX);
335  if (!loaded_bdds.get()) throw BESInternalError("Null BESDDSResonse in the NCML DDS handler.", __FILE__, __LINE__);
336  dds = NCMLUtil::getDDSFromEitherResponse(loaded_bdds.get());
337  VALID_PTR(dds);
338  dds->filename(data_path);
339  dds->set_dataset_name(data_path);
340  }
341  catch (InternalErr &e) {
342  throw BESDapError(e.get_error_message(), true, e.get_error_code(), __FILE__, __LINE__);
343  }
344  catch (Error &e) {
345  throw BESDapError(e.get_error_message(), false, e.get_error_code(), __FILE__, __LINE__);
346  }
347  catch (BESError &e){
348  throw;
349  }
350  catch (...) {
351  throw BESDapError("Caught unknown error build ** DMR response", true, unknown_error, __FILE__, __LINE__);
352  }
353 
354  // Extract the DMR Response object - this holds the DMR used by the
355  // other parts of the framework.
356  BESResponseObject *response = dhi.response_handler->get_response_object();
357  BESDMRResponse &bdmr = dynamic_cast<BESDMRResponse &>(*response);
358 
359  // Get the DMR made by the BES in the BES/dap/BESDMRResponseHandler, make sure there's a
360  // factory we can use and then dump the DAP2 variables and attributes in using the
361  // BaseType::transform_to_dap4() method that transforms individual variables
362  DMR *dmr = bdmr.get_dmr();
363  dmr->set_factory(new D4BaseTypeFactory);
364  dmr->build_using_dds(*dds);
365 
366  // Instead of fiddling with the internal storage of the DHI object,
367  // (by setting dhi.data[DAP4_CONSTRAINT], etc., directly) use these
368  // methods to set the constraints. But, why? Ans: from Patrick is that
369  // in the 'container' mode of BES each container can have a different
370  // CE.
371  bdmr.set_dap4_constraint(dhi);
372  bdmr.set_dap4_function(dhi);
373 
374  return true;
375 }
376 
377 bool NCMLRequestHandler::ncml_build_vers(BESDataHandlerInterface &dhi)
378 {
379  BESVersionInfo *info = dynamic_cast<BESVersionInfo *>(dhi.response_handler->get_response_object());
380  if (!info) throw InternalErr(__FILE__, __LINE__, "Expected a BESVersionInfo instance");
381 
382  info->add_module(MODULE_NAME, MODULE_VERSION);
383  return true;
384 }
385 
386 bool NCMLRequestHandler::ncml_build_help(BESDataHandlerInterface &dhi)
387 {
388  BESInfo *info = dynamic_cast<BESInfo *>(dhi.response_handler->get_response_object());
389  if (!info) throw InternalErr(__FILE__, __LINE__, "Expected a BESVersionInfo instance");
390 
391  // This is an example. If you had a help file you could load it like
392  // this and if your handler handled the following responses.
393  map<string, string> attrs;
394  attrs["name"] = MODULE_NAME;
395  attrs["version"] = MODULE_VERSION;
396 
397  list<string> services;
398  BESServiceRegistry::TheRegistry()->services_handled(ncml_module::ModuleConstants::NCML_NAME, services);
399  if (services.size() > 0) {
400  string handles = BESUtil::implode(services, ',');
401  attrs["handles"] = handles;
402  }
403  info->begin_tag("module", &attrs);
404  //info->add_data_from_file( "NCML.Help", "NCML Help" ) ;
405  info->add_data("Please consult the online documentation at " + ncml_module::ModuleConstants::DOC_WIKI_URL);
406  info->end_tag("module");
407 
408  return true;
409 }
410 
411 void NCMLRequestHandler::dump(ostream &strm) const
412 {
413  strm << BESIndent::LMarg << "NCMLRequestHandler::dump - (" << (void *) this << ")" << endl;
414  BESIndent::Indent();
416  BESIndent::UnIndent();
417 }
418 
Provides a mechanism for accessing container information from different container stores registered w...
virtual BESContainerStorage * find_persistence(const std::string &persist_name)
find the persistence store with the given name
provides persistent storage for data storage information represented by a container.
virtual bool del_container(const std::string &s_name)=0
removes a container with the given symbolic name
virtual BESContainer * look_for(const std::string &sym_name)=0
looks for a container in this persistent store
virtual void add_container(const std::string &sym_name, const std::string &real_name, const std::string &type)=0
adds a container with the provided information
A container is something that holds data. E.G., a netcdf file or a database entry.
Definition: BESContainer.h:65
std::string get_symbolic_name() const
retrieve the symbolic name for this container
Definition: BESContainer.h:221
virtual std::string access()=0
returns the true name of this container
Represents an OPeNDAP DAS DAP2 data object within the BES.
Holds a DDS object within the BES.
libdap::DDS * get_dds()
Represents an OPeNDAP DMR DAP4 data object within the BES.
error object created from libdap error objects and can handle those errors
Definition: BESDapError.h:59
virtual void set_dap4_function(BESDataHandlerInterface &dhi)
set the constraint depending on the context
virtual void set_dap4_constraint(BESDataHandlerInterface &dhi)
set the constraint depending on the context
virtual void set_constraint(BESDataHandlerInterface &dhi)
set the constraint depending on the context
Represents an OPeNDAP DataDDS DAP2 data object within the BES.
Structure storing information used by the BES to handle the request.
std::map< std::string, std::string > data
the map of string data that will be required for the current request.
BESContainer * container
pointer to current container in this interface
static bool IsSet(const std::string &flagName)
see if the debug context flagName is set to true
Definition: BESDebug.h:168
Base exception class for the BES with basic string message.
Definition: BESError.h:59
informational response object
Definition: BESInfo.h:63
virtual void add_data(const std::string &s)
add data to this informational object. If buffering is not set then the information is output directl...
Definition: BESInfo.cc:160
exception thrown if internal error encountered
virtual void execute_current(BESDataHandlerInterface &dhi)
Execute a single method for the current container that will fill in the response object rather than i...
Represents a specific data type request handler.
virtual void dump(std::ostream &strm) const
dumps information about this object
virtual BESResponseObject * get_response_object()
return the current response object
Abstract base class representing a specific set of information in response to a request to the BES.
virtual void services_handled(const std::string &handler, std::list< std::string > &services)
returns the list of servies provided by the handler in question
virtual bool start(std::string name)
Definition: BESStopWatch.cc:67
static std::string implode(const std::list< std::string > &values, char delim)
Definition: BESUtil.cc:617
void get_value(const std::string &s, std::string &val, bool &found)
Retrieve the value of a given key, if set.
Definition: TheBESKeys.cc:340
static TheBESKeys * TheKeys()
Definition: TheBESKeys.cc:71
virtual void dump(std::ostream &strm) const
dumps information about this object
static libdap::DDS * getDDSFromEitherResponse(BESDapResponse *response)
Definition: NCMLUtil.cc:356
static void populateDASFromDDS(libdap::DAS *das, const libdap::DDS &dds_const)
Definition: NCMLUtil.cc:276
static void copyVariablesAndAttributesInto(libdap::DDS *dds_out, const libdap::DDS &dds_in)
Definition: NCMLUtil.cc:332
Helper class for temporarily hijacking an existing dhi to load a DDX response for one particular file...
NcML Parser for adding/modifying/removing metadata (attributes) to existing local datasets using NcML...
static const std::string DOC_WIKI_URL
static const std::string NCML_NAME